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galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122774694, updated on 22-Mar-2024

Summary

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Gene symbol
galnt1
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
Locus tag
JOB18_034123
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See galnt1 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
14
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG9 NC_058029.1 (18014952..18053269)

Linkage Group LG9 - NC_058029.1Genomic Context describing neighboring genes Neighboring gene transcriptional repressor scratch 1-like Neighboring gene INO80 complex subunit C Neighboring gene transmembrane protein 245-like Neighboring gene transmembrane protein 245

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058029.1 Chromosome LG9 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058029.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    18014952..18053269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044034169.1 → XP_043890104.1  polypeptide N-acetylgalactosaminyltransferase 1

    Conserved Domains (2) summary
    cd02510
    Location:117 → 417
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:430 → 548
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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