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zbtb44 zinc finger and BTB domain containing 44 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122773382, updated on 22-Mar-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
Locus tag
JOB18_026693
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See zbtb44 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
6
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG8 NC_058028.1 (24531174..24546607)

Linkage Group LG8 - NC_058028.1Genomic Context describing neighboring genes Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 15-like Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 8-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene POU class 2 homeobox associating factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058028.1 Chromosome LG8 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058028.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    24531174..24546607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044032023.1 → XP_043887958.1  zinc finger and BTB domain-containing protein 44 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:407 → 471
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:511 → 533
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  2. XM_044032024.1 → XP_043887959.1  zinc finger and BTB domain-containing protein 44 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:397 → 461
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:311 → 461
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:501 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  3. XM_044032025.1 → XP_043887960.1  zinc finger and BTB domain-containing protein 44 isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:407 → 471
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:423 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 130
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein
Heading Accession and Version

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