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pdcd5 programmed cell death 5 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122772810, updated on 22-Mar-2024

Summary

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Gene symbol
pdcd5
Gene description
programmed cell death 5
Locus tag
JOB18_025132
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See pdcd5 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
6
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG7 NC_058027.1 (21452704..21457655)

Linkage Group LG7 - NC_058027.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein C Neighboring gene 5-hydroxyisourate hydrolase-like Neighboring gene cytochrome b-245 light chain Neighboring gene mevalonate (diphospho) decarboxylase a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058027.1 Chromosome LG7 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058027.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    21452704..21457655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044031111.1 → XP_043887046.1  programmed cell death protein 5

    Conserved Domains (1) summary
    COG2118
    Location:1 → 115
    PDCD5; DNA-binding TFAR19-related protein, PDSD5 family [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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