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LOC122771480 xylosyltransferase 1-like [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122771480, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122771480
Gene description
xylosyltransferase 1-like
Locus tag
JOB18_026569
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
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Genomic context

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See LOC122771480 in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
11
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG6 NC_058026.1 (5970294..6053168, complement)

Linkage Group LG6 - NC_058026.1Genomic Context describing neighboring genes Neighboring gene MHC class II regulatory factor RFX1-like Neighboring gene relaxin-3-like Neighboring gene nodal modulator Neighboring gene germ cell-specific gene 1-like protein Neighboring gene transmembrane channel like 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058026.1 Chromosome LG6 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1-like
Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058026.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    5970294..6053168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044029074.1 → XP_043885009.1  xylosyltransferase 1-like

    Conserved Domains (1) summary
    cl27418
    Location:332 → 545
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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