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hpdb 4-hydroxyphenylpyruvate dioxygenase b [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122770074, updated on 22-Mar-2024

Summary

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Gene symbol
hpdb
Gene description
4-hydroxyphenylpyruvate dioxygenase b
Locus tag
JOB18_013227
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See hpdb in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
13
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG5 NC_058025.1 (25490448..25494538)

Linkage Group LG5 - NC_058025.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 10A-like Neighboring gene apelin receptor a Neighboring gene histone-lysine N-methyltransferase SETD1B-A-like Neighboring gene calcium release-activated calcium channel protein 1-like Neighboring gene lysine (K)-specific demethylase 2Ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058025.1 Chromosome LG5 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxyphenylpyruvate dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tyrosine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-hydroxyphenylpyruvate dioxygenase
Names
4-hydroxyphenylpyruvate dioxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058025.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    25490448..25494538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044027043.1 → XP_043882978.1  4-hydroxyphenylpyruvate dioxygenase

    Conserved Domains (1) summary
    TIGR01263
    Location:19 → 381
    4HPPD; 4-hydroxyphenylpyruvate dioxygenase
Nucleotide Protein
Heading Accession and Version

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