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chst2b carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122769362, updated on 22-Mar-2024

Summary

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Gene symbol
chst2b
Gene description
carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b
Locus tag
JOB18_003810
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See chst2b in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
1
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG1 NC_058021.1 (34895294..34898197)

Linkage Group LG1 - NC_058021.1Genomic Context describing neighboring genes Neighboring gene procollagen C-endopeptidase enhancer 2b Neighboring gene uncharacterized LOC122769540 Neighboring gene transient receptor potential cation channel, subfamily C, member 1 Neighboring gene divergent protein kinase domain 2Ab Neighboring gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058021.1 Chromosome LG1 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058021.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    34895294..34898197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044025851.1 → XP_043881786.1  carbohydrate sulfotransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases