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LOC122769344 E3 ubiquitin-protein ligase RNF34-like [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122769344, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122769344
Gene description
E3 ubiquitin-protein ligase RNF34-like
Locus tag
JOB18_006459
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
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Genomic context

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See LOC122769344 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
8
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG5 NC_058025.1 (25522528..25527575, complement)

Linkage Group LG5 - NC_058025.1Genomic Context describing neighboring genes Neighboring gene calcium release-activated calcium channel protein 1-like Neighboring gene lysine (K)-specific demethylase 2Ba Neighboring gene linkage group 5 C5orf34 homolog Neighboring gene solute carrier family 7 member 4 Neighboring gene uncharacterized LOC122769312

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058025.1 Chromosome LG5 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF34-like
Names
E3 ubiquitin-protein ligase RNF34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058025.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    25522528..25527575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044025814.1 → XP_043881749.1  E3 ubiquitin-protein ligase RNF34-like isoform X1

    Conserved Domains (2) summary
    cd16500
    Location:326 → 364
    RING-HC_CARP; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein CARP-1, CARP-2 and similar proteins
    cl28890
    Location:59 → 105
    FYVE_like_SF; FYVE domain like superfamily

  2. XM_044025815.1 → XP_043881750.1  E3 ubiquitin-protein ligase RNF34-like isoform X2

    Conserved Domains (2) summary
    cd16500
    Location:312 → 350
    RING-HC_CARP; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein CARP-1, CARP-2 and similar proteins
    cl28890
    Location:59 → 105
    FYVE_like_SF; FYVE domain like superfamily
Nucleotide Protein
Heading Accession and Version

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