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b4galnt1b beta-1,4-N-acetyl-galactosaminyl transferase 1b [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122768416, updated on 22-Mar-2024

Summary

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Gene symbol
b4galnt1b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1b
Locus tag
JOB18_014993
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See b4galnt1b in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
13
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG4 NC_058024.1 (8173474..8185065, complement)

Linkage Group LG4 - NC_058024.1Genomic Context describing neighboring genes Neighboring gene activin receptor type-1B-like Neighboring gene ankyrin repeat domain 33Ab Neighboring gene Rho guanine nucleotide exchange factor (GEF) 25b Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene FKBP prolyl isomerase 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058024.1 Chromosome LG4 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058024.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    8173474..8185065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044024412.1 → XP_043880347.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cd00761
    Location:291 → 384
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_044024413.1 → XP_043880348.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cd00761
    Location:291 → 384
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_044024414.1 → XP_043880349.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cd00761
    Location:291 → 384
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_044024411.1 → XP_043880346.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cd00761
    Location:313 → 406
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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