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chpfa chondroitin polymerizing factor a [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122765270, updated on 22-Mar-2024

Summary

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Gene symbol
chpfa
Gene description
chondroitin polymerizing factor a
Locus tag
JOB18_046423
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See chpfa in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
4
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG2 NC_058022.1 (9125333..9132224)

Linkage Group LG2 - NC_058022.1Genomic Context describing neighboring genes Neighboring gene pyridoxal kinase-like Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene acid-sensing (proton-gated) ion channel family member 4a Neighboring gene par-3 family cell polarity regulator beta b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058022.1 Chromosome LG2 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058022.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    9125333..9132224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044019433.1 → XP_043875368.1  chondroitin sulfate synthase 2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases