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LOC122760665 polypeptide N-acetylgalactosaminyltransferase 5 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122760665, updated on 22-Mar-2024

Summary

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Gene symbol
LOC122760665
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
Locus tag
JOB18_040004
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See LOC122760665 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) Unplaced Scaffold NW_025320914.1 (54003..62407)

NW_025320914.1Genomic Context describing neighboring genes Neighboring gene ermin-like Neighboring gene cytohesin 1 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025320914 Unplaced Scaffold Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NW_025320914.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    54003..62407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044015809.1 → XP_043871744.1  polypeptide N-acetylgalactosaminyltransferase 5

    Conserved Domains (3) summary
    pfam05483
    Location:97 → 272
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    cd02510
    Location:355 → 658
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:673 → 789
    RICIN; Ricin-type beta-trefoil
Nucleotide Protein
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