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lman2la lectin, mannose-binding 2-like a [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122758159, updated on 19-Jun-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
Locus tag
JOB18_016581
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See lman2la in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
9
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG21 NC_058040.1 (10075527..10079581, complement)

Linkage Group LG21 - NC_058040.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene WW domain binding protein 1 Neighboring gene T-box transcription factor 3a Neighboring gene T-box transcription factor 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058040.1 Chromosome LG21 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lectin, mannose-binding 2-like a
Names
VIP36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058040.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    10075527..10079581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044012110.1 → XP_043868045.1  lectin, mannose-binding 2-like a isoform X2

    Conserved Domains (1) summary
    cl14058
    Location:30 → 280
    lectin_L-type; legume lectins

  2. XM_044012109.1 → XP_043868044.1  lectin, mannose-binding 2-like a isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:30 → 291
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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