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CELF3 CUGBP Elav-like family member 3 [ Cervus elaphus (red deer) ]

Gene ID: 122677907, updated on 22-Mar-2024

Summary

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Gene symbol
CELF3
Gene description
CUGBP Elav-like family member 3
See related
EnsemblRapid:ENSCESG00005025681
Gene type
protein coding
RefSeq status
MODEL
Organism
Cervus elaphus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
Orthologs
human mouse all
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Genomic context

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See CELF3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
13
Annotation release Status Assembly Chr Location
100 current mCerEla1.1 (GCF_910594005.1) 20 NC_057834.1 (41956235..41971465)

Chromosome 20 - NC_057834.1Genomic Context describing neighboring genes Neighboring gene ornithine decarboxylase antizyme 3 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin 27 Neighboring gene 40S ribosomal protein S27-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057834.1 Chromosome 20 Reference mCerEla1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cervus elaphus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCerEla1.1

Genomic

  1. NC_057834.1 Reference mCerEla1.1

    Range
    41956235..41971465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043878225.1 → XP_043734160.1  CUGBP Elav-like family member 3 isoform X1

    Related
    ENSCESP00005033907.1, ENSCEST00005039716.1
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 376
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:373 → 451
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_043878226.1 → XP_043734161.1  CUGBP Elav-like family member 3 isoform X2

    Conserved Domains (4) summary
    PRK12323
    Location:214 → 375
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:372 → 450
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_043878227.1 → XP_043734162.1  CUGBP Elav-like family member 3 isoform X3

    Conserved Domains (4) summary
    PRK12323
    Location:213 → 375
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:372 → 450
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:93 → 173
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  4. XM_043878230.1 → XP_043734165.1  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A212CHG6
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  5. XM_043878229.1 → XP_043734164.1  CUGBP Elav-like family member 3 isoform X5

    UniProtKB/TrEMBL
    A0A212CHG6
    Conserved Domains (3) summary
    cd12639
    Location:296 → 374
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:2 → 381
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:17 → 97
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  6. XM_043878228.1 → XP_043734163.1  CUGBP Elav-like family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A212CHG6
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
Nucleotide Protein
Heading Accession and Version

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