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LOC122654534 hydroxyproline O-galactosyltransferase GALT6-like [ Telopea speciosissima ]

Gene ID: 122654534, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122654534
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Telopea speciosissima
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Proteaceae; Telopea
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Genomic context

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See LOC122654534 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Tspe_v1 (GCF_018873765.1) 3 NC_057918.1 (10013629..10033267)

Chromosome 3 - NC_057918.1Genomic Context describing neighboring genes Neighboring gene probable prolyl 4-hydroxylase 7 Neighboring gene serine/threonine-protein kinase D6PK Neighboring gene uncharacterized LOC122654210 Neighboring gene AAA-ATPase At3g28580-like Neighboring gene AAA-ATPase ASD, mitochondrial-like Neighboring gene AAA-ATPase At3g28580-like Neighboring gene AAA-ATPase ASD, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057918.1 Chromosome 3 Reference Tspe_v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Telopea speciosissima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tspe_v1

Genomic

  1. NC_057918.1 Reference Tspe_v1

    Range
    10013629..10033267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043848659.1 → XP_043704594.1  hydroxyproline O-galactosyltransferase GALT6-like

    Conserved Domains (1) summary
    PLN03133
    Location:133 → 674
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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