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wb wing blister [ Vespula pensylvanica (western yellowjacket) ]

Gene ID: 122635624, updated on 10-Oct-2024

Summary

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Gene symbol
wb
Gene description
wing blister
Locus tag
H0235_015801
Gene type
protein coding
RefSeq status
MODEL
Organism
Vespula pensylvanica
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula
Orthologs
fruit fly honey bee all
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Genomic context

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Location:
chromosome: 18
Exon count:
44
Annotation release Status Assembly Chr Location
100 current ASM1446617v1 (GCF_014466175.1) 18 NC_057702.1 (1818107..1911507, complement)

Chromosome 18 - NC_057702.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122635337 Neighboring gene uncharacterized LOC122635626 Neighboring gene programmed cell death 6-interacting protein-like protein AliX Neighboring gene uncharacterized LOC122635625 Neighboring gene uncharacterized LOC122635628 Neighboring gene kielin/chordin-like protein Neighboring gene uncharacterized LOC122635629

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057702.1 Chromosome 18 Reference ASM1446617v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vespula pensylvanica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1446617v1

Genomic

  1. NC_057702.1 Reference ASM1446617v1

    Range
    1818107..1911507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043826031.1 → XP_043681966.1  laminin subunit alpha-1 isoform X1

    Conserved Domains (7) summary
    smart00180
    Location:1062 → 1107
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2888 → 3017
    LamG; Laminin G domain
    cd00055
    Location:1619 → 1653
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3041 → 3198
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR04523
    Location:1716 → 2245
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02548
    Location:1335 → 1460
    Laminin_B; Laminin B (Domain IV)
    cl02806
    Location:52 → 280
    Laminin_N; Laminin N-terminal (Domain VI)

  2. XM_043826032.1 → XP_043681967.1  laminin subunit alpha-1 isoform X2

    Conserved Domains (6) summary
    smart00180
    Location:602 → 647
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2428 → 2557
    LamG; Laminin G domain
    cd00055
    Location:1159 → 1193
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2581 → 2738
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR04523
    Location:1256 → 1785
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02548
    Location:875 → 1000
    Laminin_B; Laminin B (Domain IV)

  3. XM_043826033.1 → XP_043681968.1  laminin subunit alpha-1 isoform X3

    UniProtKB/TrEMBL
    A0A834K817
    Conserved Domains (6) summary
    smart00180
    Location:420 → 465
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00282
    Location:2246 → 2375
    LamG; Laminin G domain
    cd00055
    Location:977 → 1011
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2399 → 2556
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    TIGR04523
    Location:1074 → 1603
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02548
    Location:693 → 818
    Laminin_B; Laminin B (Domain IV)
Nucleotide Protein
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