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LOC122596041 carboxyl-terminal-processing peptidase 1, chloroplastic [ Erigeron canadensis ]

Gene ID: 122596041, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122596041
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Erigeron canadensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Astereae; North American clade; Conyzinae; Erigeron
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Genomic context

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See LOC122596041 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
100 current C_canadensis_v1 (GCF_010389155.1) 4 NC_057764.1 (27584975..27590072)

Chromosome 4 - NC_057764.1Genomic Context describing neighboring genes Neighboring gene replication factor C subunit 1 Neighboring gene ubiquinone biosynthesis protein COQ9-B, mitochondrial Neighboring gene guanylate-binding protein 3-like Neighboring gene uncharacterized LOC122595856

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057764.1 Chromosome 4 Reference C_canadensis_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Erigeron canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_canadensis_v1 Primary Assembly

Genomic

  1. NC_057764.1 Reference C_canadensis_v1 Primary Assembly

    Range
    27584975..27590072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043768543.1 → XP_043624478.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

    Conserved Domains (1) summary
    PLN00049
    Location:100 → 441
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_043768544.1 → XP_043624479.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2

    Conserved Domains (1) summary
    PLN00049
    Location:5 → 275
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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