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LOC122565544 putative histone-lysine N-methyltransferase PRDM6 [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122565544, updated on 25-Jan-2024

Summary

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Gene symbol
LOC122565544
Gene description
putative histone-lysine N-methyltransferase PRDM6
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
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Genomic context

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See LOC122565544 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 2 NC_057711.1 (70003412..70223340)

Chromosome 2 - NC_057711.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 24 Neighboring gene peptidyl-prolyl cis-trans isomerase C-like Neighboring gene centrosomal protein of 120 kDa Neighboring gene filaggrin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057711.1 Chromosome 2 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative histone-lysine N-methyltransferase PRDM6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057711.1 Reference ASM401019v2 Primary Assembly

    Range
    70003412..70223340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043721601.1 → XP_043577536.1  putative histone-lysine N-methyltransferase PRDM6

    Conserved Domains (2) summary
    sd00017
    Location:460 → 480
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19191
    Location:203 → 331
    PR-SET_PRDM6; PR-SET domain found in PR domain zinc finger protein 6 (PRDM6) and similar proteins
Nucleotide Protein
Heading Accession and Version

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