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LOC122565542 procathepsin L-like [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122565542, updated on 11-Jan-2024

Summary

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Gene symbol
LOC122565542
Gene description
procathepsin L-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
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Genomic context

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See LOC122565542 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 31 NC_057740.1 (5977973..5998568)

Chromosome 31 - NC_057740.1Genomic Context describing neighboring genes Neighboring gene procathepsin L-like Neighboring gene cysteine proteinase 4-like Neighboring gene procathepsin L-like Neighboring gene procathepsin L-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057740.1 Chromosome 31 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procathepsin L-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057740.1 Reference ASM401019v2 Primary Assembly

    Range
    5977973..5998568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043721597.1 → XP_043577532.1  procathepsin L-like

    Conserved Domains (2) summary
    smart00848
    Location:30 → 88
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    cd02248
    Location:118 → 355
    Peptidase_C1A; Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, ...
Nucleotide Protein
Heading Accession and Version

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