U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC122565541 cysteine proteinase 4-like [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122565541, updated on 11-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC122565541
Gene description
cysteine proteinase 4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC122565541 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 31 NC_057740.1 (5873199..5963943)

Chromosome 31 - NC_057740.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene procathepsin L-like Neighboring gene procathepsin L-like Neighboring gene procathepsin L-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_057740.1 Chromosome 31 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cysteine proteinase 4-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057740.1 Reference ASM401019v2 Primary Assembly

    Range
    5873199..5963943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043721596.1 → XP_043577531.1  cysteine proteinase 4-like

    Conserved Domains (3) summary
    smart00645
    Location:188 → 280
    Pept_C1; Papain family cysteine protease
    smart00848
    Location:101 → 159
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    cd02248
    Location:480 → 692
    Peptidase_C1A; Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.