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dera deoxyribose-phosphate aldolase (putative) [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122561618, updated on 22-Mar-2024

Summary

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Gene symbol
dera
Gene description
deoxyribose-phosphate aldolase (putative)
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
Orthologs
human zebrafish all
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Genomic context

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See dera in Genome Data Viewer
Location:
chromosome: 23
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 23 NC_057732.1 (11853677..11898622, complement)

Chromosome 23 - NC_057732.1Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1-like Neighboring gene solute carrier family 15 member 5 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene EGFR pathway substrate 8a, signaling adaptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057732.1 Chromosome 23 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057732.1 Reference ASM401019v2 Primary Assembly

    Range
    11853677..11898622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043713527.1 → XP_043569462.1  deoxyribose-phosphate aldolase isoform X3

    Conserved Domains (1) summary
    cd00959
    Location:55 → 284
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  2. XM_043713526.1 → XP_043569461.1  deoxyribose-phosphate aldolase isoform X2

    Conserved Domains (1) summary
    cd00959
    Location:56 → 285
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  3. XM_043713525.1 → XP_043569460.1  deoxyribose-phosphate aldolase isoform X1

    Conserved Domains (1) summary
    cd00959
    Location:57 → 286
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

  4. XM_043713528.1 → XP_043569463.1  deoxyribose-phosphate aldolase isoform X4

    Conserved Domains (1) summary
    cd00959
    Location:50 → 279
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

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