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unm_hu7910 un-named hu7910 [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122549457, updated on 22-Mar-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
40
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 4 NC_057713.1 (135241481..135466937)

Chromosome 4 - NC_057713.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase-like Neighboring gene sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3-like Neighboring gene clavesin-1-like Neighboring gene chromodomain helicase DNA binding protein 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057713.1 Chromosome 4 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057713.1 Reference ASM401019v2 Primary Assembly

    Range
    135241481..135466937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043689310.1 → XP_043545245.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (6) summary
    TIGR02795
    Location:454 → 564
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:1 → 236
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:481 → 652
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:125 → 407
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:534 → 560
    TPR; TPR repeat [structural motif]
    cl40423
    Location:700 → 885
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_043689302.1 → XP_043545237.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (6) summary
    TIGR02795
    Location:497 → 607
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 279
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:524 → 695
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:168 → 450
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:577 → 603
    TPR; TPR repeat [structural motif]
    cl40423
    Location:743 → 928
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_043689307.1 → XP_043545242.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (7) summary
    TIGR02795
    Location:483 → 593
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 279
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:510 → 681
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:168 → 561
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00008
    Location:486 → 511
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:563 → 589
    TPR; TPR repeat [structural motif]
    cl40423
    Location:729 → 914
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_043689304.1 → XP_043545239.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (7) summary
    TIGR02795
    Location:496 → 606
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 279
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:523 → 694
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:168 → 449
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00008
    Location:499 → 524
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:576 → 602
    TPR; TPR repeat [structural motif]
    cl40423
    Location:742 → 927
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_043689309.1 → XP_043545244.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (6) summary
    TIGR02795
    Location:497 → 607
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 279
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:524 → 695
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:168 → 450
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:577 → 603
    TPR; TPR repeat [structural motif]
    cl40423
    Location:743 → 900
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_043689303.1 → XP_043545238.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (6) summary
    TIGR02795
    Location:496 → 606
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 278
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:523 → 694
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:174 → 449
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:576 → 602
    TPR; TPR repeat [structural motif]
    cl40423
    Location:742 → 927
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_043689308.1 → XP_043545243.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (7) summary
    TIGR02795
    Location:482 → 592
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:27 → 264
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:509 → 680
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:153 → 435
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00008
    Location:485 → 510
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:562 → 588
    TPR; TPR repeat [structural motif]
    cl40423
    Location:728 → 913
    cupin_RmlC-like; RmlC-like cupin superfamily

  8. XM_043689306.1 → XP_043545241.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (6) summary
    TIGR02795
    Location:487 → 597
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:17 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:514 → 685
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    COG5271
    Location:158 → 440
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:567 → 593
    TPR; TPR repeat [structural motif]
    cl40423
    Location:733 → 918
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
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