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LOC122542048 host cell factor 1-like [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122542048, updated on 11-Jan-2024

Summary

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Gene symbol
LOC122542048
Gene description
host cell factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC122542048 in Genome Data Viewer
Location:
chromosome: 39
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 39 NC_057748.1 (26797753..26846063)

Chromosome 39 - NC_057748.1Genomic Context describing neighboring genes Neighboring gene methyl CpG binding protein 2 Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene ras-related protein Rab-7a-like Neighboring gene uncharacterized LOC122542050 Neighboring gene uncharacterized LOC122542364 Neighboring gene HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057748.1 Chromosome 39 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057748.1 Reference ASM401019v2 Primary Assembly

    Range
    26797753..26846063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043679336.1 → XP_043535271.1  host cell factor 1-like

    Conserved Domains (5) summary
    PLN02193
    Location:189 → 445
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:980 → 1341
    PHA03247; large tegument protein UL36; Provisional
    PRK14971
    Location:976 → 1079
    PRK14971; DNA polymerase III subunit gamma/tau
    cd00063
    Location:1372 → 1476
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:323 → 376
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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