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kirrel3a kirre like nephrin family adhesion molecule 3a [ Chiloscyllium plagiosum (whitespotted bambooshark) ]

Gene ID: 122540749, updated on 22-Mar-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
Gene type
protein coding
RefSeq status
MODEL
Organism
Chiloscyllium plagiosum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium
Orthologs
human zebrafish all
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: 35
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM401019v2 (GCF_004010195.1) 35 NC_057744.1 (33627888..34196580, complement)

Chromosome 35 - NC_057744.1Genomic Context describing neighboring genes Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like Neighboring gene src substrate protein p85-like Neighboring gene uncharacterized LOC122540751

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057744.1 Chromosome 35 Reference ASM401019v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chiloscyllium plagiosum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM401019v2 Primary Assembly

Genomic

  1. NC_057744.1 Reference ASM401019v2 Primary Assembly

    Range
    33627888..34196580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043676910.1 → XP_043532845.1  kin of IRRE-like protein 3 isoform X2

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  2. XM_043676908.1 → XP_043532843.1  kin of IRRE-like protein 3 isoform X1

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  3. XM_043676912.1 → XP_043532847.1  kin of IRRE-like protein 3 isoform X4

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  4. XM_043676911.1 → XP_043532846.1  kin of IRRE-like protein 3 isoform X3

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  5. XM_043676913.1 → XP_043532848.1  kin of IRRE-like protein 3 isoform X5

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains

  6. XM_043676914.1 → XP_043532849.1  kin of IRRE-like protein 3 isoform X6

    Conserved Domains (3) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd05758
    Location:389 → 486
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
Nucleotide Protein
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