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BCL6-AS1 BCL6 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 122526776, updated on 16-Jan-2024

Summary

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Official Symbol
BCL6-AS1provided by HGNC
Official Full Name
BCL6 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51843
See related
Ensembl:ENSG00000285938
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lnc-RP11-211G3.3.1-1
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Genomic context

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See BCL6-AS1 in Genome Data Viewer
Location:
3q27.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (187743669..187746026)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (190561178..190563535)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (187461457..187463814)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene somatostatin Neighboring gene ReSE screen-validated silencer GRCh37_chr3:187416261-187416442 Neighboring gene hCG1645011-like Neighboring gene receptor transporter protein 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:187455905-187456884 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:187457386-187457561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187458977-187459478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187459479-187459978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:187462369-187462894 Neighboring gene BCL6 transcription repressor Neighboring gene uncharacterized LOC105374263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20970 Neighboring gene uncharacterized LOC105374264 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187580545-187581195 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187607545-187608148 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187608149-187608752

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. we found that the boundaries of lnc-RP11-211G3.3.1-1 match the boundaries of the BCL6 translocation zone quite precisely
    Title: Convergent BCL6 and lncRNA promoters demarcate the major breakpoint region for BCL6 translocations.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • BCL6 antisense 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_173091.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC072022
    Related
    ENST00000648485.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    187743669..187746026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    190561178..190563535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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