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Hcf Host cell factor [ Polistes fuscatus (common paper wasp) ]

Gene ID: 122523167, updated on 10-Oct-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
EnsemblRapid:LOC122523167
Gene type
protein coding
RefSeq status
MODEL
Organism
Polistes fuscatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Polistinae; Polistini; Polistes
Orthologs
fruit fly honey bee all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current CU_Pfus_HIC (GCF_010416935.1) Unplaced Scaffold NW_025113140.1 (6372476..6380245, complement)

NW_025113140.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122523168 Neighboring gene Ras-related protein interacting with calmodulin Neighboring gene coatomer subunit alpha Neighboring gene ATP synthase, subunit F

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025113140 Unplaced Scaffold Reference CU_Pfus_HIC

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polistes fuscatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CU_Pfus_HIC

Genomic

  1. NW_025113140.1 Reference CU_Pfus_HIC

    Range
    6372476..6380245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043644800.1 → XP_043500735.1  host cell factor isoform X2

    Related
    XP_043500735.1, XM_043644800.1
    Conserved Domains (6) summary
    PLN02193
    Location:7 → 310
    PLN02193; nitrile-specifier protein
    PLN03209
    Location:348 → 591
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    COG5271
    Location:898 → 1187
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd00063
    Location:1408 → 1520
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:22 → 67
    Kelch; KELCH repeat [structural motif]
    pfam15402
    Location:404 → 475
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  2. XM_043644799.1 → XP_043500734.1  host cell factor isoform X1

    Related
    XP_043500734.1, XM_043644799.1
    Conserved Domains (6) summary
    PLN02193
    Location:7 → 310
    PLN02193; nitrile-specifier protein
    PLN03209
    Location:348 → 591
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    COG5271
    Location:898 → 1187
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd00063
    Location:1408 → 1520
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:22 → 67
    Kelch; KELCH repeat [structural motif]
    pfam15402
    Location:404 → 475
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7

  3. XM_043644801.1 → XP_043500736.1  host cell factor isoform X3

    Related
    XP_043500736.1, XM_043644801.1
    Conserved Domains (6) summary
    PLN02193
    Location:9 → 222
    PLN02193; nitrile-specifier protein
    PLN03209
    Location:260 → 503
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    COG5271
    Location:810 → 1099
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd00063
    Location:1320 → 1432
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:100 → 151
    Kelch; KELCH repeat [structural motif]
    pfam15402
    Location:316 → 387
    Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
Nucleotide Protein
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