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C8orf90 chromosome 8 open reading frame 90 [ Homo sapiens (human) ]

Gene ID: 122455339, updated on 28-Oct-2024

Summary

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Official Symbol
C8orf90provided by HGNC
Official Full Name
chromosome 8 open reading frame 90provided by HGNC
Primary source
HGNC:HGNC:56305
See related
Ensembl:ENSG00000226490 AllianceGenome:HGNC:56305
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
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Genomic context

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See C8orf90 in Genome Data Viewer
Location:
8q24.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (141514671..141518729)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (142643223..142647643)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (142524771..142528829)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142517660-142518180 Neighboring gene uncharacterized LOC124902031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19593 Neighboring gene uncharacterized LOC105375791 Neighboring gene Sharpr-MPRA regulatory region 1454 Neighboring gene Sharpr-MPRA regulatory region 1869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142545064-142545649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142558100-142558604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142558605-142559109 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142561559-142562060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142562061-142562560 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:142566739-142567001 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142569505-142570496 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142570497-142571488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142585360-142585860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142587423-142588412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142591081-142591580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142592469-142593282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142599778-142600296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142608084-142608974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142623529-142624078 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:142653536-142653719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142655873-142656419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142659443-142660272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142689993-142690836 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:142692286-142692461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142710650-142711224 Neighboring gene MPRA-validated peak7195 silencer Neighboring gene uncharacterized LOC124902074 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142740701-142741201 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:142745139-142746338 Neighboring gene microRNA 1302-7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C8orf90

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395960.1 → NP_001382889.1  uncharacterized protein C8orf90

    Status: VALIDATED

    Source sequence(s)
    AC138647
    Consensus CDS
    CCDS94348.1
    UniProtKB/Swiss-Prot
    A0A2R8Y2Y2
    UniProtKB/TrEMBL
    A0A1B0GTL3
    Related
    ENSP00000493548.1, ENST00000643770.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    141514671..141518729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791786.1 Reference GRCh38.p14 PATCHES

    Range
    181225..185283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    142643223..142647643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A2R8Y2Y2.1 GenPept UniProtKB/Swiss-Prot:A0A2R8Y2Y2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.