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CHD1 chromodomain helicase DNA binding protein 1 [ Cervus canadensis ]

Gene ID: 122439502, updated on 22-Mar-2024

Summary

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Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cervus canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
Orthologs
human mouse all
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Genomic context

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See CHD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
38
Annotation release Status Assembly Chr Location
100 current ASM1932006v1 (GCF_019320065.1) 4 NC_057389.1 (12452491..12528476)

Chromosome 4 - NC_057389.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA U3 Neighboring gene repulsive guidance molecule BMP co-receptor b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057389.1 Chromosome 4 Reference ASM1932006v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cervus canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1932006v1

Genomic

  1. NC_057389.1 Reference ASM1932006v1

    Range
    12452491..12528476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043464577.1 → XP_043320512.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (5) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_043464578.1 → XP_043320513.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (5) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  3. XM_043464576.1 → XP_043320511.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    Conserved Domains (5) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1688 → 1797
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  4. XM_043464580.1 → XP_043320515.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    Conserved Domains (5) summary
    PLN03142
    Location:462 → 998
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    TIGR01642
    Location:1600 → 1709
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    cd18661
    Location:385 → 441
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:274 → 352
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:458 → 695
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
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