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HCFC1 host cell factor C1 [ Cervus canadensis ]

Gene ID: 122434534, updated on 22-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cervus canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM1932006v1 (GCF_019320065.1) X NC_057419.1 (142744501..142767929, complement)

Chromosome X - NC_057419.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057419.1 Chromosome X Reference ASM1932006v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cervus canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1932006v1

Genomic

  1. NC_057419.1 Reference ASM1932006v1

    Range
    142744501..142767929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043457995.1 → XP_043313930.1  host cell factor 1 isoform X6

    Conserved Domains (3) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1813 → 1842
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  2. XM_043457993.1 → XP_043313928.1  host cell factor 1 isoform X4

    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1858 → 1887
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam06070
    Location:1397 → 1604
    Herpes_UL32; Herpesvirus large structural phosphoprotein UL32

  3. XM_043457994.1 → XP_043313929.1  host cell factor 1 isoform X5

    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK13914
    Location:467 → 809
    PRK13914; invasion associated endopeptidase
    cd00063
    Location:1826 → 1855
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  4. XM_043457992.1 → XP_043313927.1  host cell factor 1 isoform X3

    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK13914
    Location:467 → 809
    PRK13914; invasion associated endopeptidase
    cd00063
    Location:1869 → 1898
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  5. XM_043457991.1 → XP_043313926.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK13914
    Location:467 → 809
    PRK13914; invasion associated endopeptidase
    cd00063
    Location:1869 → 1898
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam06070
    Location:1409 → 1616
    Herpes_UL32; Herpesvirus large structural phosphoprotein UL32

  6. XM_043457990.1 → XP_043313925.1  host cell factor 1 isoform X1

    Conserved Domains (5) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    PRK13914
    Location:467 → 809
    PRK13914; invasion associated endopeptidase
    cd00063
    Location:1870 → 1899
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam06070
    Location:1409 → 1616
    Herpes_UL32; Herpesvirus large structural phosphoprotein UL32
Nucleotide Protein
Heading Accession and Version

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