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ZFP90 ZFP90 zinc finger protein [ Cervus canadensis ]

Gene ID: 122420368, updated on 22-Mar-2024

Summary

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Gene symbol
ZFP90
Gene description
ZFP90 zinc finger protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Cervus canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae; Cervus
Orthologs
human mouse all
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Genomic context

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See ZFP90 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM1932006v1 (GCF_019320065.1) 18 NC_057403.1 (36503189..36663621, complement)

Chromosome 18 - NC_057403.1Genomic Context describing neighboring genes Neighboring gene cadherin 1 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene cadherin 3 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC122420371 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene sphingomyelin phosphodiesterase 3 Neighboring gene uncharacterized LOC122420372

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057403.1 Chromosome 18 Reference ASM1932006v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 90 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cervus canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1932006v1

Genomic

  1. NC_057403.1 Reference ASM1932006v1

    Range
    36503189..36663621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043435488.1 → XP_043291423.1  zinc finger protein 90 homolog isoform X8

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  2. XM_043435485.1 → XP_043291420.1  zinc finger protein 90 homolog isoform X8

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  3. XM_043435486.1 → XP_043291421.1  zinc finger protein 90 homolog isoform X8

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  4. XM_043435480.1 → XP_043291415.1  zinc finger protein 90 homolog isoform X3

    Conserved Domains (1) summary
    COG1321
    Location:73 → 112
    MntR; Mn-dependent transcriptional regulator, DtxR family [Transcription]

  5. XM_043435479.1 → XP_043291414.1  zinc finger protein 90 homolog isoform X2

    Conserved Domains (2) summary
    COG1321
    Location:122 → 161
    MntR; Mn-dependent transcriptional regulator, DtxR family [Transcription]
    COG3335
    Location:288 → 367
    COG3335; Transposase [Mobilome: prophages, transposons]

  6. XM_043435490.1 → XP_043291425.1  zinc finger protein 90 homolog isoform X10

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  7. XM_043435489.1 → XP_043291424.1  zinc finger protein 90 homolog isoform X9

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  8. XM_043435475.1 → XP_043291410.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_043435477.1 → XP_043291412.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]

  10. XM_043435476.1 → XP_043291411.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]

  11. XM_043435478.1 → XP_043291413.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]

  12. XM_043435474.1 → XP_043291409.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:334 → 631
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_043435484.1 → XP_043291419.1  zinc finger protein 90 homolog isoform X7

    Conserved Domains (1) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box

  14. XM_043435483.1 → XP_043291418.1  zinc finger protein 90 homolog isoform X6

  15. XM_043435482.1 → XP_043291417.1  zinc finger protein 90 homolog isoform X5

  16. XM_043435481.1 → XP_043291416.1  zinc finger protein 90 homolog isoform X4

RNA

  1. XR_006263272.1 RNA Sequence

  2. XR_006263270.1 RNA Sequence

  3. XR_006263268.1 RNA Sequence

  4. XR_006263271.1 RNA Sequence

  5. XR_006263269.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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