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plecb plectin b [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122360772, updated on 22-Mar-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 16
Exon count:
34
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 16 NC_056714.1 (5658970..5721832)

Chromosome 16 - NC_056714.1Genomic Context describing neighboring genes Neighboring gene MTCL family member 3a Neighboring gene enoyl CoA hydratase domain containing 1 Neighboring gene microtubule-actin cross-linking factor 1-like Neighboring gene microtubule actin crosslinking factor 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056714.1 Chromosome 16 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056714.1 Reference ASM1883169v1 Primary Assembly

    Range
    5658970..5721832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043261625.1 → XP_043117560.1  LOW QUALITY PROTEIN: plectin

    Conserved Domains (8) summary
    PTZ00121
    Location:2751 → 3534
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:1881 → 1976
    SPEC; Spectrin repeats
    smart00250
    Location:5643 → 5680
    PLEC; Plectin repeat
    COG0419
    Location:2541 → 2942
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1389 → 1727
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1977 → 2156
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:8 → 113
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:2168 → 2213
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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