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pigv phosphatidylinositol glycan anchor biosynthesis, class V [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122360520, updated on 8-May-2024

Summary

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Gene symbol
pigv
Gene description
phosphatidylinositol glycan anchor biosynthesis, class V
See related
EnsemblRapid:ENSPRZG00000005934
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See pigv in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 16 NC_056714.1 (24230071..24232593)

Chromosome 16 - NC_056714.1Genomic Context describing neighboring genes Neighboring gene GPN-loop GTPase 2 Neighboring gene AT-rich interaction domain 1Aa Neighboring gene zinc finger DHHC-type palmitoyltransferase 18a Neighboring gene terminal nucleotidyltransferase 5ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056714.1 Chromosome 16 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mannosyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
palmitoyltransferase ZDHHC18-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056714.1 Reference ASM1883169v1 Primary Assembly

    Range
    24230071..24232593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043261190.1 → XP_043117125.1  palmitoyltransferase ZDHHC18-A

    Related
    ENSPRZP00000005210.1, ENSPRZT00000009209.1
    Conserved Domains (1) summary
    cl21590
    Location:15 → 511
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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