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tlr18 toll-like receptor 18 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122360297, updated on 8-May-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
See related
EnsemblRapid:ENSPRZG00000029256
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 16 NC_056714.1 (17740782..17748389, complement)

Chromosome 16 - NC_056714.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 25B Neighboring gene S100 calcium binding protein A1 Neighboring gene uncharacterized LOC122360298 Neighboring gene leucine rich repeat and Ig domain containing 4b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056714.1 Chromosome 16 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056714.1 Reference ASM1883169v1 Primary Assembly

    Range
    17740782..17748389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043260786.1 → XP_043116721.1  toll-like receptor 18

    Related
    ENSPRZP00000062026.1, ENSPRZT00000070807.1
    Conserved Domains (4) summary
    smart00255
    Location:654 → 793
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:59 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00031
    Location:56 → 79
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:364 → 392
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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