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LOC122355686 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122355686, updated on 8-May-2024

Summary

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Gene symbol
LOC122355686
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like
See related
EnsemblRapid:ENSPRZG00000013801
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
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Genomic context

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See LOC122355686 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 12 NC_056710.1 (15451637..15511996)

Chromosome 12 - NC_056710.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122355071 Neighboring gene neurotrypsin Neighboring gene cannabinoid receptor 2 Neighboring gene ankyrin repeat and fibronectin type-III domain-containing protein 1-like Neighboring gene noggin-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056710.1 Chromosome 12 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056710.1 Reference ASM1883169v1 Primary Assembly

    Range
    15451637..15511996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043254224.1 → XP_043110159.1  LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Related
    ENSPRZP00000023057.1, ENSPRZT00000029035.1
Nucleotide Protein
Heading Accession and Version

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