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LOC122349803 aspartyl/asparaginyl beta-hydroxylase-like [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122349803, updated on 8-May-2024

Summary

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Gene symbol
LOC122349803
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:ENSPRZG00000015393
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC122349803 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 7 NC_056705.1 (34160512..34164180)

Chromosome 7 - NC_056705.1Genomic Context describing neighboring genes Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1-like Neighboring gene collagen alpha-1(XXV) chain-like Neighboring gene uncharacterized LOC122348371 Neighboring gene copine-7-like Neighboring gene adenosine receptor A2b-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056705.1 Chromosome 7 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056705.1 Reference ASM1883169v1 Primary Assembly

    Range
    34160512..34164180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043245974.1 → XP_043101909.1  aspartyl/asparaginyl beta-hydroxylase-like

    Related
    ENSPRZP00000027428.1, ENSPRZT00000033482.1
    Conserved Domains (3) summary
    TIGR02917
    Location:99 → 282
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:183 → 209
    TPR; TPR repeat [structural motif]
    cl40423
    Location:346 → 507
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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