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galntl6 polypeptide N-acetylgalactosaminyltransferase like 6 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122346832, updated on 8-May-2024

Summary

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Gene symbol
galntl6
Gene description
polypeptide N-acetylgalactosaminyltransferase like 6
See related
EnsemblRapid:ENSPRZG00000017285
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See galntl6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 1 NC_056699.1 (18431138..18577587)

Chromosome 1 - NC_056699.1Genomic Context describing neighboring genes Neighboring gene SPARC-like 1 Neighboring gene TNFAIP3 interacting protein 2 Neighboring gene secretory calcium-binding phosphoprotein 1 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056699.1 Chromosome 1 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase-like 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056699.1 Reference ASM1883169v1 Primary Assembly

    Range
    18431138..18577587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043241787.1 → XP_043097722.1  polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X2

    Related
    ENSPRZP00000032013.1, ENSPRZT00000038432.1
    Conserved Domains (2) summary
    cd02510
    Location:142 → 401
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:421 → 548
    RICIN; Ricin-type beta-trefoil

  2. XM_043241715.1 → XP_043097650.1  polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X1

    Related
    ENSPRZP00000032011.1, ENSPRZT00000038430.1
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:457 → 584
    RICIN; Ricin-type beta-trefoil
Nucleotide Protein
Heading Accession and Version

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