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pomt1 protein-O-mannosyltransferase 1 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122345713, updated on 8-May-2024

Summary

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Gene symbol
pomt1
Gene description
protein-O-mannosyltransferase 1
See related
EnsemblRapid:ENSPRZG00000028783
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See pomt1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 5 NC_056703.1 (18914683..18921515)

Chromosome 5 - NC_056703.1Genomic Context describing neighboring genes Neighboring gene glucosaminyl (N-acetyl) transferase 4a Neighboring gene silent chromatin protein ESC1-like Neighboring gene coiled-coil domain containing 180 Neighboring gene caspase recruitment domain family, member 9 Neighboring gene small nuclear RNA activating complex, polypeptide 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056703.1 Chromosome 5 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056703.1 Reference ASM1883169v1 Primary Assembly

    Range
    18914683..18921515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043240126.1 → XP_043096061.1  protein O-mannosyl-transferase 1

    Related
    ENSPRZP00000061087.1, ENSPRZT00000069674.1
    Conserved Domains (1) summary
    COG1928
    Location:12 → 715
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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