U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

traf2b Tnf receptor-associated factor 2b [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122345294, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
traf2b
Gene description
Tnf receptor-associated factor 2b
See related
EnsemblRapid:ENSPRZG00000019247
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See traf2b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 5 NC_056703.1 (24633302..24652541, complement)

Chromosome 5 - NC_056703.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 203 Neighboring gene aminolevulinate dehydratase Neighboring gene uncharacterized LOC122345299 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene coenzyme Q4 homolog (S. cerevisiae) Neighboring gene B-box and SPRY domain containing Neighboring gene zinc finger, MYND-type containing 19

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_056703.1 Chromosome 5 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of NF-kappaB-inducing kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056703.1 Reference ASM1883169v1 Primary Assembly

    Range
    24633302..24652541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043239291.1 → XP_043095226.1  TNF receptor-associated factor 2 isoform X4

    Related
    ENSPRZP00000037085.1, ENSPRZT00000043872.1
    Conserved Domains (3) summary
    cd03778
    Location:368 → 531
    MATH_TRAF2; Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the ...
    cl17238
    Location:42 → 82
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:188 → 245
    zf-TRAF; TRAF-type zinc finger

  2. XM_043239290.1 → XP_043095225.1  TNF receptor-associated factor 2 isoform X3

    Related
    ENSPRZP00000037092.1, ENSPRZT00000043879.1
    Conserved Domains (3) summary
    cd03778
    Location:378 → 541
    MATH_TRAF2; Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the ...
    cl17238
    Location:52 → 92
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:198 → 255
    zf-TRAF; TRAF-type zinc finger

  3. XM_043239289.1 → XP_043095224.1  TNF receptor-associated factor 2 isoform X2

    Conserved Domains (3) summary
    cd03778
    Location:394 → 555
    MATH_TRAF2; Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the ...
    cl17238
    Location:80 → 120
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:226 → 283
    zf-TRAF; TRAF-type zinc finger

  4. XM_043239287.1 → XP_043095222.1  TNF receptor-associated factor 2 isoform X1

    Related
    ENSPRZP00000037090.1, ENSPRZT00000043877.1
    Conserved Domains (3) summary
    cd03778
    Location:406 → 569
    MATH_TRAF2; Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the ...
    cl17238
    Location:80 → 120
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:226 → 283
    zf-TRAF; TRAF-type zinc finger

  5. XM_043239292.1 → XP_043095227.1  TNF receptor-associated factor 2 isoform X5

    Conserved Domains (2) summary
    cd03778
    Location:275 → 438
    MATH_TRAF2; Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the ...
    cl40617
    Location:95 → 152
    zf-TRAF; TRAF-type zinc finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases