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galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122344642, updated on 8-May-2024

Summary

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Gene symbol
galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
EnsemblRapid:ENSPRZG00000014337
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See galnt9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 5 NC_056703.1 (4487841..4557844, complement)

Chromosome 5 - NC_056703.1Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 7-like Neighboring gene ATPase family AAA domain containing 1a Neighboring gene fibrosin-like 1 Neighboring gene uncharacterized si:dkey-112e17.1 Neighboring gene checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056703.1 Chromosome 5 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056703.1 Reference ASM1883169v1 Primary Assembly

    Range
    4487841..4557844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043238166.1 → XP_043094101.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    Conserved Domains (2) summary
    cd00161
    Location:401 → 529
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl11394
    Location:155 → 388
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_043238165.1 → XP_043094100.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    Related
    ENSPRZP00000024381.1, ENSPRZT00000030366.1
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:467 → 595
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  3. XM_043238167.1 → XP_043094102.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X3

    Conserved Domains (2) summary
    cd00161
    Location:166 → 294
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    cl11394
    Location:1 → 153
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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