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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122341250, updated on 8-May-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSPRZG00000006024
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) Unplaced Scaffold NW_025048767.1 (131456..358238, complement)

NW_025048767.1Genomic Context describing neighboring genes Neighboring gene arginine--tRNA ligase, cytoplasmic-like Neighboring gene uncharacterized LOC122341248

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025048767 Unplaced Scaffold Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NW_025048767.1 Reference ASM1883169v1 Primary Assembly

    Range
    131456..358238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043234619.1 → XP_043090554.1  delta-sarcoglycan isoform X2

    Related
    ENSPRZP00000005311.1, ENSPRZT00000009372.1

  2. XM_043234621.1 → XP_043090556.1  delta-sarcoglycan isoform X2

  3. XM_043234620.1 → XP_043090555.1  delta-sarcoglycan isoform X2

    Related
    ENSPRZP00000005324.1, ENSPRZT00000009385.1

  4. XM_043234618.1 → XP_043090553.1  delta-sarcoglycan isoform X1

    Related
    ENSPRZP00000005316.1, ENSPRZT00000009377.1
Nucleotide Protein
Heading Accession and Version

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