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kirrel1b kirre like nephrin family adhesion molecule 1b [ Puntigrus tetrazona (Sumatra barb) ]

Gene ID: 122324135, updated on 8-May-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
EnsemblRapid:ENSPRZG00000017415
Gene type
protein coding
RefSeq status
MODEL
Organism
Puntigrus tetrazona
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Smiliogastrinae; Puntigrus
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1883169v1 (GCF_018831695.1) 2 NC_056700.1 (21246200..21279009, complement)

Chromosome 2 - NC_056700.1Genomic Context describing neighboring genes Neighboring gene zinc finger E-box binding homeobox 1a Neighboring gene NOD-like receptor family B, member 5 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056700.1 Chromosome 2 Reference ASM1883169v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Puntigrus tetrazona Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1883169v1 Primary Assembly

Genomic

  1. NC_056700.1 Reference ASM1883169v1 Primary Assembly

    Range
    21246200..21279009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043218383.1 → XP_043074318.1  kin of IRRE-like protein 1b isoform X4

    Related
    ENSPRZP00000032700.1, ENSPRZT00000039119.1
    Conserved Domains (5) summary
    smart00408
    Location:139 → 207
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:317 → 392
    IG; Immunoglobulin
    smart00410
    Location:236 → 307
    IG_like; Immunoglobulin like
    cd00096
    Location:412 → 416
    Ig; Ig strand B [structural motif]
    cl11960
    Location:394 → 497
    Ig; Immunoglobulin domain

  2. XM_043218367.1 → XP_043074302.1  kin of IRRE-like protein 1b isoform X2

    Related
    ENSPRZP00000032678.1, ENSPRZT00000039097.1
    Conserved Domains (5) summary
    smart00408
    Location:139 → 207
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:317 → 392
    IG; Immunoglobulin
    smart00410
    Location:236 → 307
    IG_like; Immunoglobulin like
    cd00096
    Location:412 → 416
    Ig; Ig strand B [structural motif]
    cl11960
    Location:394 → 497
    Ig; Immunoglobulin domain

  3. XM_043218375.1 → XP_043074310.1  kin of IRRE-like protein 1b isoform X3

    Related
    ENSPRZP00000032663.1, ENSPRZT00000039082.1
    Conserved Domains (5) summary
    smart00408
    Location:139 → 207
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:317 → 392
    IG; Immunoglobulin
    smart00410
    Location:236 → 307
    IG_like; Immunoglobulin like
    cd00096
    Location:412 → 416
    Ig; Ig strand B [structural motif]
    cl11960
    Location:394 → 497
    Ig; Immunoglobulin domain

  4. XM_043218361.1 → XP_043074296.1  kin of IRRE-like protein 1b isoform X1

    Conserved Domains (5) summary
    smart00408
    Location:139 → 207
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:317 → 392
    IG; Immunoglobulin
    smart00410
    Location:236 → 307
    IG_like; Immunoglobulin like
    cd00096
    Location:412 → 416
    Ig; Ig strand B [structural motif]
    cl11960
    Location:394 → 497
    Ig; Immunoglobulin domain
Nucleotide Protein
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