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LOC122286242 polygalacturonate 4-alpha-galacturonosyltransferase-like [ Carya illinoinensis ]

Gene ID: 122286242, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122286242
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase-like
Locus tag
CIPAW_01G258500
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122286242 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 1 NC_056752.1 (53365848..53376085)

Chromosome 1 - NC_056752.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein MADS3 Neighboring gene histone deacetylase complex subunit SAP18-like Neighboring gene gibberellin 20 oxidase 1-D-like Neighboring gene uncharacterized LOC122303537

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056752.1 Chromosome 1 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056752.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    53365848..53376085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043095406.1 → XP_042951340.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X4

    UniProtKB/TrEMBL
    A0A8T1RRS9, A0A8T1RSC4
    Conserved Domains (1) summary
    PLN02910
    Location:42 → 638
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_043095405.1 → XP_042951339.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X3

    UniProtKB/TrEMBL
    A0A8T1RR23, A0A8T1RSC4
    Conserved Domains (1) summary
    PLN02910
    Location:81 → 677
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  3. XM_043095403.1 → XP_042951337.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X1

    UniProtKB/TrEMBL
    A0A8T1RSC4, A0A8T1RSG6
    Conserved Domains (1) summary
    PLN02910
    Location:153 → 749
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  4. XM_043095404.1 → XP_042951338.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X2

    UniProtKB/TrEMBL
    A0A8T1RSC4
    Conserved Domains (1) summary
    PLN02910
    Location:123 → 719
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  5. XM_043095407.1 → XP_042951341.1  polygalacturonate 4-alpha-galacturonosyltransferase-like isoform X5

    UniProtKB/TrEMBL
    A0A8T1RSC4
    Conserved Domains (1) summary
    PLN02910
    Location:2 → 587
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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