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LOC122276201 carboxyl-terminal-processing peptidase 2, chloroplastic [ Carya illinoinensis ]

Gene ID: 122276201, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122276201
Gene description
carboxyl-terminal-processing peptidase 2, chloroplastic
Locus tag
CIPAW_01G175400
Gene type
protein coding
RefSeq status
MODEL
Organism
Carya illinoinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Carya
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Genomic context

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See LOC122276201 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
100 current C.illinoinensisPawnee_v1 (GCF_018687715.1) 1 NC_056752.1 (43588202..43596298, complement)

Chromosome 1 - NC_056752.1Genomic Context describing neighboring genes Neighboring gene small acidic protein 1 Neighboring gene uncharacterized LOC122276192 Neighboring gene ammonium transporter 1 member 1 Neighboring gene DEAD-box ATP-dependent RNA helicase 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056752.1 Chromosome 1 Reference C.illinoinensisPawnee_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes. Mattison CP, et al. J Agric Food Chem, 2017 Feb 22. PMID 28121438
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carya illinoinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.illinoinensisPawnee_v1 Primary Assembly

Genomic

  1. NC_056752.1 Reference C.illinoinensisPawnee_v1 Primary Assembly

    Range
    43588202..43596298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043085779.1 → XP_042941713.1  carboxyl-terminal-processing peptidase 2, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A922G1L6
    Conserved Domains (1) summary
    PLN00049
    Location:154 → 542
    PLN00049; carboxyl-terminal processing protease; Provisional

  2. XM_043085774.1 → XP_042941708.1  carboxyl-terminal-processing peptidase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A922G1N0
    Conserved Domains (1) summary
    PLN00049
    Location:159 → 547
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
Heading Accession and Version

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