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LOC122253312 irregular chiasm C-roughest protein-like [ Penaeus japonicus ]

Gene ID: 122253312, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122253312
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:LOC122253312
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus japonicus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC122253312 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Mj_TUMSAT_v1.0 (GCF_017312705.1) Unplaced Scaffold NW_025030731.1 (92498..133608)

NW_025030731.1Genomic Context describing neighboring genes Neighboring gene cell division protein ZipA-like Neighboring gene cell division protein ZipA-like Neighboring gene dopamine receptor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025030731 Unplaced Scaffold Reference Mj_TUMSAT_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mj_TUMSAT_v1.0 Primary Assembly

Genomic

  1. NW_025030731.1 Reference Mj_TUMSAT_v1.0 Primary Assembly

    Range
    92498..133608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043016325.1 → XP_042872259.1  irregular chiasm C-roughest protein-like

    Related
    XP_042872259.1, XM_043016325.1
    Conserved Domains (4) summary
    smart00408
    Location:344 → 395
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:38 → 131
    IG; Immunoglobulin
    cd00096
    Location:431 → 435
    Ig; Ig strand B [structural motif]
    cl11960
    Location:413 → 508
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases