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LOC122247943 carotenoid isomerooxygenase-like [ Penaeus japonicus ]

Gene ID: 122247943, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122247943
Gene description
carotenoid isomerooxygenase-like
See related
EnsemblRapid:LOC122247943
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus japonicus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC122247943 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Mj_TUMSAT_v1.0 (GCF_017312705.1) Unplaced Scaffold NW_025029472.1 (782548..792339)

NW_025029472.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase ZNRF1-like Neighboring gene neuronal acetylcholine receptor subunit alpha-10-like Neighboring gene Gustatory receptor 10b Neighboring gene mediator of DNA damage checkpoint protein 1-like Neighboring gene uncharacterized LOC122247954 Neighboring gene protein sel-1 homolog 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025029472 Unplaced Scaffold Reference Mj_TUMSAT_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mj_TUMSAT_v1.0 Primary Assembly

Genomic

  1. NW_025029472.1 Reference Mj_TUMSAT_v1.0 Primary Assembly

    Range
    782548..792339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043007656.1 → XP_042863590.1  carotenoid isomerooxygenase-like

    Related
    XP_042863590.1, XM_043007656.1
    Conserved Domains (1) summary
    cl10080
    Location:33 → 519
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
Heading Accession and Version

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