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DYSF dysferlin [ Tyto alba (common barn owl) ]

Gene ID: 122154878, updated on 3-Aug-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
59
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881327.1 (55308548..55411801, complement)

NW_024881327.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 6B Neighboring gene cytochrome P450 26B1 Neighboring gene zinc finger protein 638 Neighboring gene poly(A) binding protein interacting protein 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024881327 Unplaced Scaffold Reference T.alba_DEE_v4.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881327.1 Reference T.alba_DEE_v4.0

    Range
    55308548..55411801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042807882.1 → XP_042663816.1  dysferlin isoform X10

    Conserved Domains (7) summary
    cd04011
    Location:214 → 323
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1135 → 1263
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:377 → 537
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1574 → 1697
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1808 → 1939
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:858 → 916
    DysFN; Dysferlin domain, N-terminal region

  2. XM_042807880.1 → XP_042663814.1  dysferlin isoform X8

    Conserved Domains (7) summary
    cd04011
    Location:214 → 323
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1135 → 1263
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:377 → 537
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1595 → 1718
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1829 → 1960
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:858 → 916
    DysFN; Dysferlin domain, N-terminal region

  3. XM_042807877.1 → XP_042663811.1  dysferlin isoform X5

    Conserved Domains (7) summary
    cd04011
    Location:214 → 323
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1135 → 1263
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:377 → 537
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1599 → 1722
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1833 → 1964
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:858 → 916
    DysFN; Dysferlin domain, N-terminal region

  4. XM_042807874.1 → XP_042663808.1  dysferlin isoform X2

    Conserved Domains (7) summary
    cd04011
    Location:214 → 323
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1149 → 1277
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:377 → 551
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1613 → 1736
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 124
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1847 → 1978
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:872 → 930
    DysFN; Dysferlin domain, N-terminal region

  5. XM_042807881.1 → XP_042663815.1  dysferlin isoform X9

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1137 → 1265
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 539
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1576 → 1699
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1810 → 1941
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:860 → 918
    DysFN; Dysferlin domain, N-terminal region

  6. XM_042807879.1 → XP_042663813.1  dysferlin isoform X7

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1137 → 1265
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 539
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1597 → 1720
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1831 → 1962
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:860 → 918
    DysFN; Dysferlin domain, N-terminal region

  7. XM_042807876.1 → XP_042663810.1  dysferlin isoform X4

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1137 → 1265
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 539
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1601 → 1724
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1835 → 1966
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:860 → 918
    DysFN; Dysferlin domain, N-terminal region

  8. XM_042807875.1 → XP_042663809.1  dysferlin isoform X3

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1151 → 1279
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 553
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1601 → 1724
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1835 → 1966
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:874 → 932
    DysFN; Dysferlin domain, N-terminal region

  9. XM_042807878.1 → XP_042663812.1  dysferlin isoform X6

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1151 → 1279
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 553
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1590 → 1713
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1824 → 1955
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:874 → 932
    DysFN; Dysferlin domain, N-terminal region

  10. XM_042807873.1 → XP_042663807.1  dysferlin isoform X1

    Conserved Domains (7) summary
    cd04011
    Location:216 → 325
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1151 → 1279
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:379 → 553
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1615 → 1738
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:5 → 126
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1849 → 1980
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:874 → 932
    DysFN; Dysferlin domain, N-terminal region
Nucleotide Protein
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