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Ubxn2a UBX domain protein 2A [ Dipodomys spectabilis (banner-tailed kangaroo rat) ]

Gene ID: 122122468, updated on 22-Mar-2024

Summary

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Gene symbol
Ubxn2a
Gene description
UBX domain protein 2A
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys spectabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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See Ubxn2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1905484v1 (GCF_019054845.1) Unplaced Scaffold NW_024870887.1 (993582..1019652)

NW_024870887.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 29 Neighboring gene ATPase family AAA domain containing 2B Neighboring gene MFSD2 lysolipid transporter B, sphingolipid Neighboring gene WD repeat and coiled coil containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024870887 Unplaced Scaffold Reference ASM1905484v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys spectabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1905484v1

Genomic

  1. NW_024870887.1 Reference ASM1905484v1

    Range
    993582..1019652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042696675.1 → XP_042552609.1  UBX domain-containing protein 2A isoform X1

    Conserved Domains (2) summary
    cd17160
    Location:167 → 250
    UBX_UBXN2A; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins
    cl02662
    Location:59 → 149
    SEP; SEP domain

  2. XM_042696674.1 → XP_042552608.1  UBX domain-containing protein 2A isoform X1

    Conserved Domains (2) summary
    cd17160
    Location:167 → 250
    UBX_UBXN2A; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins
    cl02662
    Location:59 → 149
    SEP; SEP domain

  3. XM_042696673.1 → XP_042552607.1  UBX domain-containing protein 2A isoform X1

    Conserved Domains (2) summary
    cd17160
    Location:167 → 250
    UBX_UBXN2A; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins
    cl02662
    Location:59 → 149
    SEP; SEP domain

  4. XM_042696676.1 → XP_042552610.1  UBX domain-containing protein 2A isoform X2

    Conserved Domains (2) summary
    cd17160
    Location:137 → 220
    UBX_UBXN2A; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2A (UBXN2A) and similar proteins
    pfam08059
    Location:35 → 108
    SEP; SEP domain
Nucleotide Protein
Heading Accession and Version

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