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LOC122035786 F-box protein GID2-like [ Zingiber officinale ]

Gene ID: 122035786, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122035786
Gene description
F-box protein GID2-like
Locus tag
ZIOFF_075806
Gene type
protein coding
RefSeq status
MODEL
Organism
Zingiber officinale
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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Genomic context

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See LOC122035786 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Zo_v1.1 (GCF_018446385.1) Unplaced Scaffold NW_024589809.1 (30331..31169)

NW_024589809.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 90-5, chloroplastic-like Neighboring gene uncharacterized membrane protein At1g16860-like Neighboring gene uncharacterized protein At4g06744-like Neighboring gene uncharacterized LOC122035784

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024589809 Unplaced Scaffold Reference Zo_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zo_v1.1 Primary Assembly

Genomic

  1. NW_024589809.1 Reference Zo_v1.1 Primary Assembly

    Range
    30331..31169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042594891.1 → XP_042450825.1  F-box protein GID2-like

    UniProtKB/TrEMBL
    A0A8J5BUF1, A0A8J5FMF7
    Conserved Domains (1) summary
    smart00256
    Location:51 → 86
    FBOX; A Receptor for Ubiquitination Targets
Nucleotide Protein
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