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LOC122030850 rhamnogalacturonan I rhamnosyltransferase 1-like [ Zingiber officinale ]

Gene ID: 122030850, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122030850
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Locus tag
ZIOFF_002220
Gene type
protein coding
RefSeq status
MODEL
Organism
Zingiber officinale
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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Genomic context

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See LOC122030850 in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Zo_v1.1 (GCF_018446385.1) 1A NC_055987.1 (125278468..125282006)

Chromosome 1A - NC_055987.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH13-like Neighboring gene uncharacterized LOC122030828 Neighboring gene protein TIFY 3-like Neighboring gene glucan endo-1,3-beta-glucosidase 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_055987.1 Chromosome 1A Reference Zo_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zo_v1.1 Primary Assembly

Genomic

  1. NC_055987.1 Reference Zo_v1.1 Primary Assembly

    Range
    125278468..125282006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042589907.1 → XP_042445841.1  rhamnogalacturonan I rhamnosyltransferase 1-like isoform X2

    Conserved Domains (1) summary
    cd11299
    Location:99 → 408
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

  2. XM_042589898.1 → XP_042445832.1  rhamnogalacturonan I rhamnosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8J5LVP9
    Conserved Domains (1) summary
    cd11299
    Location:99 → 424
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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