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LOC122023908 carboxyl-terminal-processing peptidase 2, chloroplastic-like [ Zingiber officinale ]

Gene ID: 122023908, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122023908
Gene description
carboxyl-terminal-processing peptidase 2, chloroplastic-like
Locus tag
ZIOFF_064833
Gene type
protein coding
RefSeq status
MODEL
Organism
Zingiber officinale
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
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Genomic context

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See LOC122023908 in Genome Data Viewer
Location:
chromosome: 9B
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Zo_v1.1 (GCF_018446385.1) 9B NC_056003.1 (16086906..16093401, complement)

Chromosome 9B - NC_056003.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 7-like Neighboring gene uncharacterized LOC122025379 Neighboring gene uncharacterized LOC122025378 Neighboring gene FACT complex subunit SPT16-like Neighboring gene F-box protein PP2-B10-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056003.1 Chromosome 9B Reference Zo_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 2, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zo_v1.1 Primary Assembly

Genomic

  1. NC_056003.1 Reference Zo_v1.1 Primary Assembly

    Range
    16086906..16093401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042582332.1 → XP_042438266.1  carboxyl-terminal-processing peptidase 2, chloroplastic-like

    Conserved Domains (1) summary
    PLN00049
    Location:165 → 553
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
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