U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC122005788 CSC1-like protein RXW8 [ Zingiber officinale ]

Gene ID: 122005788, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC122005788
Gene description
CSC1-like protein RXW8
Locus tag
ZIOFF_050856
Gene type
protein coding
RefSeq status
MODEL
Organism
Zingiber officinale
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Zingiberaceae; Zingiber
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC122005788 in Genome Data Viewer
Location:
chromosome: 7B
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Zo_v1.1 (GCF_018446385.1) 7B NC_055999.1 (58187387..58193858)

Chromosome 7B - NC_055999.1Genomic Context describing neighboring genes Neighboring gene G-box-binding factor 1-like Neighboring gene magnesium transporter MRS2-3-like Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 Neighboring gene NADH-ubiquinone oxidoreductase subunit 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_055999.1 Chromosome 7B Reference Zo_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CSC1-like protein RXW8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Zingiber officinale Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zo_v1.1 Primary Assembly

Genomic

  1. NC_055999.1 Reference Zo_v1.1 Primary Assembly

    Range
    58187387..58193858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042560992.1 → XP_042416926.1  CSC1-like protein RXW8 isoform X1

    UniProtKB/TrEMBL
    A0A8J5FSA1
    Conserved Domains (1) summary
    COG5594
    Location:3 → 655
    COG5594; Uncharacterized integral membrane protein [Function unknown]

  2. XM_042560993.1 → XP_042416927.1  CSC1-like protein RXW8 isoform X2

    UniProtKB/TrEMBL
    A0A8J5FSA1
    Conserved Domains (1) summary
    COG5594
    Location:3 → 562
    COG5594; Uncharacterized integral membrane protein [Function unknown]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases