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kirrel1b kirre like nephrin family adhesion molecule 1b [ Plectropomus leopardus (leopard coralgrouper) ]

Gene ID: 121951141, updated on 22-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Plectropomus leopardus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Plectropomus
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
100 current YSFRI_Pleo_2.0 (GCF_008729295.1) 12 NC_056474.1 (22680585..22759849, complement)

Chromosome 12 - NC_056474.1Genomic Context describing neighboring genes Neighboring gene ATP-sensitive inward rectifier potassium channel 10-like Neighboring gene CD48 antigen-like Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056474.1 Chromosome 12 Reference YSFRI_Pleo_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: kin of IRRE-like protein 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Plectropomus leopardus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference YSFRI_Pleo_2.0 Primary Assembly

Genomic

  1. NC_056474.1 Reference YSFRI_Pleo_2.0 Primary Assembly

    Range
    22680585..22759849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042497389.1 → XP_042353323.1  LOW QUALITY PROTEIN: kin of IRRE-like protein 1b

    Conserved Domains (5) summary
    smart00408
    Location:134 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    smart00410
    Location:231 → 302
    IG_like; Immunoglobulin like
    cd00096
    Location:407 → 411
    Ig; Ig strand B [structural motif]
    cl11960
    Location:389 → 492
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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